Rosetta SnugDock Protocol

[Submit SnugDock task]

[SnugDock Queue]

[SnugDock Server Documentation]

Please cite the following article when referring to results from our ROSIE server:

  1. A. Sircar & J. J. Gray, "SnugDock: Paratope structural optimization during antibody-antigen docking compensates for errors in antibody homology models," PLoS Comput. Biol. 6(1): e1000644 (2010). Online

  2. Lyskov S., Gray J.J. "The RosettaDock server for local protein-protein docking" Nucleic Acids Research 36 (Web Server Issue), W233-W238 (2008). Online

  3. Lyskov S, Chou FC, Conchúir SÓ, Der BS, Drew K, Kuroda D, Xu J, Weitzner BD, Renfrew PD, Sripakdeevong P, Borgo B, Havranek JJ, Kuhlman B, Kortemme T, Bonneau R, Gray JJ, Das R., "Serverification of Molecular Modeling Applications: The Rosetta Online Server That Includes Everyone (ROSIE)". PLoS One. 2013 May 22;8(5):e63906. doi: 10.1371/journal.pone.0063906. Print 2013. Link

Modeling tools developed by GrayLab. The Rosie implementation was developed by Sergey Lyskov.

We welcome scientific and technical comments on our server. For support please contact us at Rosetta Forums with any comments, questions or concerns.